Hold on there, Geoducks are not oysters!


Recent Publications

Crandall, Grace; Roberts, Steven (2016): Reproductive Maturation in Geoduck clams (Panopea generosa). figshare. https://dx.doi.org/10.6084/m9.figshare.3205975.v1 Retrieved: 14 41, Dec 23, 2016 (GMT) This fileset includes a research paper describing reproductive maturation in geoduck clams with 200 images of gonadal histological sections and associated datasheets.

Emma B. Timmins-Schiffman, Grace A. Crandall, Brent Vadopalas, Michael E. Riffle, Brook L. Nunn, Steven B. Roberts (2016) Integrating proteomics and selected reaction monitoring to develop a non-invasive assay for geoduck reproductive maturation bioRxiv 094615; doi: https://doi.org/10.1101/094615

[Data] Transcriptomic profiles of adult female & male gonads in Panopea generosa (Pacific geoduck).
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA316216

Panopea gonad transcriptome Open Science Framework Project
https://osf.io/3xf6m/

[Data] Geoduck (Panopea generosa) gonad DDA LC-MS/MS https://www.ebi.ac.uk/pride/archive/projects/PXD003127

[Code] Source Code for GO Analysis in Geoduck Gonad Background https://github.com/yeastrc/compgo-geoduck-public

[Data] Geoduck (Panopea generosa) gonad DIA LC-MS/MS https://www.ebi.ac.uk/pride/archive/projects/PXD004921

[Data] Selected reaction monitoring of geoduck gonad peptides to develop biomarkers of reproductive maturation status http://www.peptideatlas.org/PASS/PASS00943

[Data] Selected reaction monitoring of geoduck hemolymph peptides to develop biomarkers of reproductive maturation status http://www.peptideatlas.org/PASS/PASS00942

 

We have begun an initiative to sequence a draft genome of the geoduck clam. Feel free to contact us for more details.


Genomic Resources

Version 0.1.0 is available to download. This assembly represents scaffolds larger than 10k bp.

Total length of sequence: 314618376 bp
Total number of sequences: 19539
N50 stats: 50% of total sequence length is contained in the 6804 sequences >= 15873 bp
MD5: 50bd55f7c259498bfcc1c38a3460ebe4

Version 0.0.2 is now available to download



General Statistics
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A genome browser (v0.0.1) is available here.


All raw data is listed in this table.


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